IL_5JTE_039

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5JTE|1|AA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_039 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1971

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5JTE|1|AA|G|925
5JTE|1|AA|G|926
5JTE|1|AA|G|927
*
5JTE|1|AA|U|1390
5JTE|1|AA|U|1391

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

mRNA