IL_5JTE_060
3D structure
- PDB id
- 5JTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 5JTE|1|AA|A|1492, 5JTE|1|AA|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JTE_060 not in the Motif Atlas
- Geometric match to IL_2W2H_002
- Geometric discrepancy: 0.3174
- The information below is about IL_2W2H_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_19557.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JTE|1|AA|C|1407
5JTE|1|AA|A|1408
5JTE|1|AA|C|1409
*
5JTE|1|AA|G|1491
5JTE|1|AA|A|1492
5JTE|1|AA|A|1493
5JTE|1|AA|G|1494
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
- Chain AW
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: