IL_5JTE_066

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_066 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.1191

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5JTE|1|BA|G|24
5JTE|1|BA|U|25
5JTE|1|BA|G|26
5JTE|1|BA|G|27
5JTE|1|BA|A|28
5JTE|1|BA|U|29
5JTE|1|BA|G|30
*
5JTE|1|BA|C|510
5JTE|1|BA|U|511
5JTE|1|BA|G|512
5JTE|1|BA|A|513
5JTE|1|BA|A|514
5JTE|1|BA|A|515
5JTE|1|BA|C|516

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22