3D structure

PDB id
5JTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GUAAG*UAUC
Length
9 nucleotides
Bulged bases
5JTE|1|BA|A|1205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JTE_109 not in the Motif Atlas
Homologous match to IL_5J7L_287
Geometric discrepancy: 0.1101
The information below is about IL_5J7L_287
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_91920.1
Basepair signature
cWW-cWW-tHH-cWW
Number of instances in this motif group
1

Unit IDs

5JTE|1|BA|G|1202
5JTE|1|BA|U|1203
5JTE|1|BA|A|1204
5JTE|1|BA|A|1205
5JTE|1|BA|G|1206
*
5JTE|1|BA|U|1240
5JTE|1|BA|A|1241
5JTE|1|BA|U|1242
5JTE|1|BA|C|1243

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BL
50S ribosomal protein L15

Coloring options:


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