IL_5JTE_139

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5JTE|1|BA|A|1938, 5JTE|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_139 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.137

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5JTE|1|BA|C|1934
5JTE|1|BA|G|1935
5JTE|1|BA|A|1936
5JTE|1|BA|A|1937
5JTE|1|BA|A|1938
5JTE|1|BA|U|1939
5JTE|1|BA|U|1940
5JTE|1|BA|C|1941
5JTE|1|BA|C|1942
5JTE|1|BA|U|1943
5JTE|1|BA|U|1944
5JTE|1|BA|G|1945
*
5JTE|1|BA|C|1961
5JTE|1|BA|C|1962
5JTE|1|BA|U|1963
5JTE|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2