IL_5JTE_157

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_157 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5JTE|1|BA|C|2466
5JTE|1|BA|C|2467
5JTE|1|BA|A|2468
5JTE|1|BA|A|2469
5JTE|1|BA|G|2470
*
5JTE|1|BA|C|2480
5JTE|1|BA|G|2481
5JTE|1|BA|A|2482
5JTE|1|BA|C|2483
5JTE|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B4

50S ribosomal protein L36

Chain BM

50S ribosomal protein L16