IL_5JU8_020

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1229

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5JU8|1|AA|U|409
5JU8|1|AA|G|410
5JU8|1|AA|A|411
5JU8|1|AA|A|412
5JU8|1|AA|G|413
5JU8|1|AA|A|414
5JU8|1|AA|A|415
5JU8|1|AA|G|416
*
5JU8|1|AA|U|427
5JU8|1|AA|G|428
5JU8|1|AA|U|429
5JU8|1|AA|A|430
5JU8|1|AA|A|431
5JU8|1|AA|A|432
5JU8|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4