IL_5JU8_022

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5JU8|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5JU8|1|AA|G|446
5JU8|1|AA|G|447
5JU8|1|AA|A|448
5JU8|1|AA|G|449
5JU8|1|AA|G|450
*
5JU8|1|AA|C|483
5JU8|1|AA|G|484
5JU8|1|AA|U|485
5JU8|1|AA|U|486
5JU8|1|AA|A|487
5JU8|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16