IL_5JU8_066
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JU8_066 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1207
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JU8|1|BA|G|24
5JU8|1|BA|U|25
5JU8|1|BA|G|26
5JU8|1|BA|G|27
5JU8|1|BA|A|28
5JU8|1|BA|U|29
5JU8|1|BA|G|30
*
5JU8|1|BA|C|510
5JU8|1|BA|U|511
5JU8|1|BA|G|512
5JU8|1|BA|A|513
5JU8|1|BA|A|514
5JU8|1|BA|A|515
5JU8|1|BA|C|516
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BQ
- 50S ribosomal protein L20
- Chain BS
- 50S ribosomal protein L22
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