IL_5JU8_070

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_070 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1048

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5JU8|1|BA|G|188
5JU8|1|BA|G|189
5JU8|1|BA|A|190
5JU8|1|BA|A|191
5JU8|1|BA|C|192
5JU8|1|BA|U|193
5JU8|1|BA|G|194
*
5JU8|1|BA|C|201
5JU8|1|BA|U|202
5JU8|1|BA|A|203
5JU8|1|BA|A|204
5JU8|1|BA|G|205
5JU8|1|BA|U|206
5JU8|1|BA|A|207
5JU8|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28