IL_5JU8_073

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5JU8|1|BA|U|276, 5JU8|1|BA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2082

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5JU8|1|BA|C|274
5JU8|1|BA|C|275
5JU8|1|BA|U|276
5JU8|1|BA|G|277
5JU8|1|BA|A|278
5JU8|1|BA|A|279
5JU8|1|BA|U|280
5JU8|1|BA|C|281
*
5JU8|1|BA|G|359
5JU8|1|BA|U|360
5JU8|1|BA|G|361
5JU8|1|BA|A|362
5JU8|1|BA|G|363

Current chains

Chain BA

23S ribosomal RNA

Nearby chains