IL_5JU8_075

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5JU8|1|BA|A|504, 5JU8|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_075 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5JU8|1|BA|G|481
5JU8|1|BA|A|482
5JU8|1|BA|A|483
5JU8|1|BA|C|484
*
5JU8|1|BA|G|496
5JU8|1|BA|A|497
5JU8|1|BA|G|498
5JU8|1|BA|U|499
5JU8|1|BA|G|500
5JU8|1|BA|A|501
5JU8|1|BA|A|502
5JU8|1|BA|A|503
5JU8|1|BA|A|504
5JU8|1|BA|A|505
5JU8|1|BA|G|506
5JU8|1|BA|A|507
5JU8|1|BA|A|508
5JU8|1|BA|C|509

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24