IL_5JU8_076
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JU8_076 not in the Motif Atlas
- Homologous match to IL_5J7L_256
- Geometric discrepancy: 0.1341
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5JU8|1|BA|G|536
5JU8|1|BA|G|537
5JU8|1|BA|A|538
5JU8|1|BA|G|539
*
5JU8|1|BA|U|554
5JU8|1|BA|G|555
5JU8|1|BA|A|556
5JU8|1|BA|C|557
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BJ
- 50S ribosomal protein L13
- Chain BQ
- 50S ribosomal protein L20
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