IL_5JU8_115

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

5JU8|1|BA|U|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_115 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.1763

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5JU8|1|BA|U|1415
5JU8|1|BA|G|1416
*
5JU8|1|BA|C|1582
5JU8|1|BA|A|1583
5JU8|1|BA|U|1584
5JU8|1|BA|C|1585
5JU8|1|BA|A|1586
5JU8|1|BA|G|1587

Current chains

Chain BA

23S ribosomal RNA

Nearby chains