IL_5JU8_129

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5JU8|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_129 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0802

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5JU8|1|BA|C|1686
5JU8|1|BA|G|1687
5JU8|1|BA|U|1688
5JU8|1|BA|A|1689
5JU8|1|BA|A|1690
5JU8|1|BA|C|1691
*
5JU8|1|BA|G|1696
5JU8|1|BA|G|1697
5JU8|1|BA|A|1698
5JU8|1|BA|G|1699
5JU8|1|BA|A|1700
5JU8|1|BA|A|1701
5JU8|1|BA|G|1702

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2