IL_5JU8_140

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5JU8|1|BA|A|1938, 5JU8|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_140 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1372

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5JU8|1|BA|C|1934
5JU8|1|BA|G|1935
5JU8|1|BA|A|1936
5JU8|1|BA|A|1937
5JU8|1|BA|A|1938
5JU8|1|BA|U|1939
5JU8|1|BA|U|1940
5JU8|1|BA|C|1941
5JU8|1|BA|C|1942
5JU8|1|BA|U|1943
5JU8|1|BA|U|1944
5JU8|1|BA|G|1945
*
5JU8|1|BA|C|1961
5JU8|1|BA|C|1962
5JU8|1|BA|U|1963
5JU8|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2