IL_5JU8_151

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5JU8|1|BA|U|2131, 5JU8|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_151 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2994

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5JU8|1|BA|C|2129
5JU8|1|BA|U|2130
5JU8|1|BA|U|2131
5JU8|1|BA|U|2132
5JU8|1|BA|G|2133
5JU8|1|BA|A|2134
5JU8|1|BA|A|2135
5JU8|1|BA|G|2136
*
5JU8|1|BA|U|2155
5JU8|1|BA|G|2156
5JU8|1|BA|G|2157
5JU8|1|BA|A|2158
5JU8|1|BA|G|2159

Current chains

Chain BA

23S ribosomal RNA

Nearby chains