IL_5JU8_181

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGUUU*GAAUGUGCCUUCGGGAAC

Length

25 nucleotides

Bulged bases

5JU8|1|AA|U|1025, 5JU8|1|AA|U|1030, 5JU8|1|AA|C|1031, 5JU8|1|AA|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JU8|1|AA|G|1003
5JU8|1|AA|A|1004
5JU8|1|AA|A|1005
5JU8|1|AA|G|1006
5JU8|1|AA|U|1007
5JU8|1|AA|U|1008
5JU8|1|AA|U|1009
*
5JU8|1|AA|G|1020
5JU8|1|AA|A|1021
5JU8|1|AA|A|1022
5JU8|1|AA|U|1023
5JU8|1|AA|G|1024
5JU8|1|AA|U|1025
5JU8|1|AA|G|1026
5JU8|1|AA|C|1027
5JU8|1|AA|C|1028
5JU8|1|AA|U|1029
5JU8|1|AA|U|1030
5JU8|1|AA|C|1031
5JU8|1|AA|G|1032
5JU8|1|AA|G|1033
5JU8|1|AA|G|1034
5JU8|1|AA|A|1035
5JU8|1|AA|A|1036
5JU8|1|AA|C|1037

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14