IL_5JUU_020
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_020 not in the Motif Atlas
- Homologous match to IL_4V88_403
- Geometric discrepancy: 0.3714
- The information below is about IL_4V88_403
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85724.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|U|318
5JUU|1|A|U|319
5JUU|1|A|U|320
5JUU|1|A|C|321
5JUU|1|A|G|322
5JUU|1|A|A|323
*
5JUU|1|A|U|345
5JUU|1|A|G|346
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain FB
- eS8 (yeast S8)
- Chain IB
- uS17 (yeast S11)
- Chain W
- eL19 (yeast L19)
Coloring options: