IL_5JUU_024
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 5JUU|1|A|U|440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_024 not in the Motif Atlas
- Homologous match to IL_4V88_407
- Geometric discrepancy: 0.1676
- The information below is about IL_4V88_407
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
5JUU|1|A|U|439
5JUU|1|A|U|440
5JUU|1|A|A|441
*
5JUU|1|A|U|463
5JUU|1|A|A|464
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain DC
- yeast eEF2
- Chain GB
- uS4 (yeast S9)
- Chain VB
- eS24 (yeast S24)
Coloring options: