IL_5JUU_026

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

5JUU|1|A|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_026 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.3311

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5JUU|1|A|U|447
5JUU|1|A|C|448
*
5JUU|1|A|G|458
5JUU|1|A|G|459
5JUU|1|A|A|460

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain GB

uS4 (yeast S9)

Chain VB

eS24 (yeast S24)