IL_5JUU_037

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGCCGGU*GAUUUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|G|651
5JUU|1|A|G|652
5JUU|1|A|C|653
5JUU|1|A|C|654
5JUU|1|A|G|655
5JUU|1|A|G|656
5JUU|1|A|U|657
*
5JUU|1|A|G|677
5JUU|1|A|A|678
5JUU|1|A|U|679
5JUU|1|A|U|680
5JUU|1|A|U|681
5JUU|1|A|C|682
5JUU|1|A|C|683

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain GB

uS4 (yeast S9)