IL_5JUU_041

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

5JUU|1|A|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|A|817
5JUU|1|A|C|818
5JUU|1|A|G|819
5JUU|1|A|U|820
5JUU|1|A|U|821
5JUU|1|A|U|822
*
5JUU|1|A|A|850
5JUU|1|A|U|851
5JUU|1|A|C|852
5JUU|1|A|G|853
5JUU|1|A|U|854

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EB

eS7 (yeast S7)

Chain W

eL19 (yeast L19)