3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UUGUCAG*CUUGGAUUUA
Length
17 nucleotides
Bulged bases
5JUU|1|A|U|912, 5JUU|1|A|G|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JUU_047 not in the Motif Atlas
Homologous match to IL_8C3A_440
Geometric discrepancy: 0.2756
The information below is about IL_8C3A_440
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_22252.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

5JUU|1|A|U|893
5JUU|1|A|U|894
5JUU|1|A|G|895
5JUU|1|A|U|896
5JUU|1|A|C|897
5JUU|1|A|A|898
5JUU|1|A|G|899
*
5JUU|1|A|C|910
5JUU|1|A|U|911
5JUU|1|A|U|912
5JUU|1|A|G|913
5JUU|1|A|G|914
5JUU|1|A|A|915
5JUU|1|A|U|916
5JUU|1|A|U|917
5JUU|1|A|U|918
5JUU|1|A|A|919

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain LB
uS11 (yeast S14)
Chain YA
eS1 (yeast S1)

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1938 s
Application loaded.