IL_5JUU_052

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5JUU|1|A|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_052 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.53

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5JUU|1|A|G|1051
5JUU|1|A|U|1052
5JUU|1|A|G|1053
*
5JUU|1|A|C|1066
5JUU|1|A|C|1067

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain XA

uS2 (yeast S0)

Chain YA

eS1 (yeast S1)

Chain YB

eS27 (yeast S27)