IL_5JUU_056

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

5JUU|1|A|C|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|C|1156
5JUU|1|A|A|1157
5JUU|1|A|C|1158
5JUU|1|A|C|1159
5JUU|1|A|A|1160
*
5JUU|1|A|U|1617
5JUU|1|A|C|1618
5JUU|1|A|C|1619
5JUU|1|A|C|1620
5JUU|1|A|U|1621
5JUU|1|A|G|1622

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain CB

uS7 (yeast S5)

Chain EC

IRES

Chain NB

uS9 (yeast S16)

Chain ZB

eS28 (yeast S28)