IL_5JUU_064
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5JUU|1|A|C|1274
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_064 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.2623
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUU|1|A|U|1272
5JUU|1|A|G|1273
5JUU|1|A|C|1274
5JUU|1|A|A|1275
5JUU|1|A|U|1276
*
5JUU|1|A|A|1436
5JUU|1|A|U|1437
5JUU|1|A|G|1438
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
- Chain HB
- eS10 (yeast S10)
- Chain RB
- uS10 (yeast S20)
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