IL_5JUU_064

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5JUU|1|A|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_064 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.2623

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5JUU|1|A|U|1272
5JUU|1|A|G|1273
5JUU|1|A|C|1274
5JUU|1|A|A|1275
5JUU|1|A|U|1276
*
5JUU|1|A|A|1436
5JUU|1|A|U|1437
5JUU|1|A|G|1438

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AB

uS3 (yeast S3)

Chain AC

uS14 (yeast S29)

Chain DC

yeast eEF2

Chain EC

IRES

Chain HB

eS10 (yeast S10)

Chain RB

uS10 (yeast S20)