IL_5JUU_068
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_068 not in the Motif Atlas
- Geometric match to IL_4V88_445
- Geometric discrepancy: 0.2541
- The information below is about IL_4V88_445
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
5JUU|1|A|C|1306
5JUU|1|A|U|1307
5JUU|1|A|G|1308
*
5JUU|1|A|C|1317
5JUU|1|A|G|1318
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain OB
- eS17 (yeast S17)
- Chain XB
- eS26 (yeast S26)
Coloring options: