IL_5JUU_070
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAUAG*CUUCU
- Length
- 10 nucleotides
- Bulged bases
- 5JUU|1|A|A|1346, 5JUU|1|A|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_070 not in the Motif Atlas
- Homologous match to IL_8CRE_459
- Geometric discrepancy: 0.3019
- The information below is about IL_8CRE_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUU|1|A|A|1345
5JUU|1|A|A|1346
5JUU|1|A|U|1347
5JUU|1|A|A|1348
5JUU|1|A|G|1349
*
5JUU|1|A|C|1376
5JUU|1|A|U|1377
5JUU|1|A|U|1378
5JUU|1|A|C|1379
5JUU|1|A|U|1380
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain NB
- uS9 (yeast S16)
- Chain RB
- uS10 (yeast S20)
- Chain WA
- RACK1 (yeast Asc1)
Coloring options: