IL_5JUU_074
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5JUU|1|A|A|1516, 5JUU|1|A|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_074 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.261
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|G|1488
5JUU|1|A|U|1489
5JUU|1|A|C|1490
5JUU|1|A|U|1491
5JUU|1|A|A|1492
5JUU|1|A|A|1493
5JUU|1|A|C|1494
*
5JUU|1|A|G|1513
5JUU|1|A|U|1514
5JUU|1|A|A|1515
5JUU|1|A|A|1516
5JUU|1|A|U|1517
5JUU|1|A|C|1518
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain QB
- eS19 (yeast S19)
- Chain RB
- uS10 (yeast S20)
Coloring options: