IL_5JUU_076

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_076 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1701

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5JUU|1|A|G|1540
5JUU|1|A|G|1541
5JUU|1|A|G|1542
5JUU|1|A|A|1543
5JUU|1|A|U|1544
5JUU|1|A|A|1545
*
5JUU|1|A|U|1566
5JUU|1|A|U|1567
5JUU|1|A|C|1568
5JUU|1|A|A|1569
5JUU|1|A|A|1570
5JUU|1|A|C|1571

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain PB

uS13 (yeast S18)

Chain QB

eS19 (yeast S19)