IL_5JUU_098

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

5JUU|1|B|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_098 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.5816

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5JUU|1|B|U|169
5JUU|1|B|G|170
*
5JUU|1|B|U|248
5JUU|1|B|U|249
5JUU|1|B|U|250
5JUU|1|B|G|251
5JUU|1|B|U|252
5JUU|1|B|A|253

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain L

eL8 (yeast L8)

Chain MA

uL29 (yeast L35)

Chain Q

eL13 (yeast L13)