IL_5JUU_106

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAAUC*GGAAUAC

Length

16 nucleotides

Bulged bases

5JUU|1|B|A|519, 5JUU|1|B|U|520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_106 not in the Motif Atlas

Homologous match to IL_5TBW_019

Geometric discrepancy: 0.1883

The information below is about IL_5TBW_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74024.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5JUU|1|B|G|517
5JUU|1|B|G|518
5JUU|1|B|A|519
5JUU|1|B|U|520
5JUU|1|B|A|521
5JUU|1|B|A|522
5JUU|1|B|A|523
5JUU|1|B|U|524
5JUU|1|B|C|525
*
5JUU|1|B|G|567
5JUU|1|B|G|568
5JUU|1|B|A|569
5JUU|1|B|A|570
5JUU|1|B|U|571
5JUU|1|B|A|572
5JUU|1|B|C|573

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain H

uL4 (yeast L4)

Chain K

uL30 (yeast L7)

Chain R

eL14 (yeast L14)

Chain X

eL20 (yeast L20)