IL_5JUU_113

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_113 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1821

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5JUU|1|B|C|758
5JUU|1|B|U|759
5JUU|1|B|G|760
5JUU|1|B|A|761
5JUU|1|B|U|762
5JUU|1|B|G|763
*
5JUU|1|B|C|768
5JUU|1|B|G|769
5JUU|1|B|G|770
5JUU|1|B|A|771
5JUU|1|B|U|772
5JUU|1|B|G|773

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FA

uL15 (yeast L28)

Chain Q

eL13 (yeast L13)

Chain TA

eL42 (yeast L42)