IL_5JUU_116

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

5JUU|1|B|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_116 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.1905

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5JUU|1|B|G|833
5JUU|1|B|U|834
*
5JUU|1|B|G|859
5JUU|1|B|G|860
5JUU|1|B|C|861

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain UA

eL43 (yeast L43)

Chain W

eL19 (yeast L19)