IL_5JUU_119

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

5JUU|1|B|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_119 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.3291

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5JUU|1|B|C|873
5JUU|1|B|U|874
5JUU|1|B|G|875
*
5JUU|1|B|C|886
5JUU|1|B|G|887

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain OA

eL37 (yeast L37)