IL_5JUU_130

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5JUU|1|B|C|1016, 5JUU|1|B|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|U|1014
5JUU|1|B|U|1015
5JUU|1|B|C|1016
5JUU|1|B|C|1017
5JUU|1|B|G|1018
*
5JUU|1|B|U|1034
5JUU|1|B|G|1035
5JUU|1|B|A|1036

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain I

uL18 (yeast L5)

Chain N

uL16 (yeast L10)

Chain O

uL5 (yeast L11)