IL_5JUU_141
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5JUU|1|B|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_141 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.3742
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|B|G|1234
5JUU|1|B|U|1235
5JUU|1|B|G|1236
5JUU|1|B|G|1237
5JUU|1|B|C|1238
*
5JUU|1|B|G|1250
5JUU|1|B|A|1251
5JUU|1|B|A|1252
5JUU|1|B|U|1253
5JUU|1|B|C|1254
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain N
- uL16 (yeast L10)
- Chain P
- uL11 (yeast L12)
- Chain VA
- uL10 (yeast P0)
Coloring options: