IL_5JUU_149

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCCUGA*UGCAGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|G|1561
5JUU|1|B|C|1562
5JUU|1|B|C|1563
5JUU|1|B|U|1564
5JUU|1|B|G|1565
5JUU|1|B|A|1566
*
5JUU|1|B|U|1572
5JUU|1|B|G|1573
5JUU|1|B|C|1574
5JUU|1|B|A|1575
5JUU|1|B|G|1576
5JUU|1|B|G|1577
5JUU|1|B|C|1578

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain CA

uL23 (yeast L25)

Chain L

eL8 (yeast L8)