IL_5JUU_161

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_161 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.2071

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

5JUU|1|B|A|1895
5JUU|1|B|A|1896
5JUU|1|B|G|1897
*
5JUU|1|B|C|2338
5JUU|1|B|C|2339
5JUU|1|B|U|2340

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)