IL_5JUU_179

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5JUU|1|B|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_179 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1548

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

5JUU|1|B|U|2423
5JUU|1|B|A|2424
5JUU|1|B|G|2425
*
5JUU|1|B|U|2604
5JUU|1|B|G|2605
5JUU|1|B|G|2606
5JUU|1|B|G|2607

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain S

eL15 (yeast L15)

Chain TA

eL42 (yeast L42)