IL_5JUU_219

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACGCAGCGAAAUGCGAUACGU*AAUCUU

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|C|A|43
5JUU|1|C|A|44
5JUU|1|C|C|45
5JUU|1|C|G|46
5JUU|1|C|C|47
5JUU|1|C|A|48
5JUU|1|C|G|49
5JUU|1|C|C|50
5JUU|1|C|G|51
5JUU|1|C|A|52
5JUU|1|C|A|53
5JUU|1|C|A|54
5JUU|1|C|U|55
5JUU|1|C|G|56
5JUU|1|C|C|57
5JUU|1|C|G|58
5JUU|1|C|A|59
5JUU|1|C|U|60
5JUU|1|C|A|61
5JUU|1|C|C|62
5JUU|1|C|G|63
5JUU|1|C|U|64
*
5JUU|1|C|A|96
5JUU|1|C|A|97
5JUU|1|C|U|98
5JUU|1|C|C|99
5JUU|1|C|U|100
5JUU|1|C|U|101

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain CA

uL23 (yeast L25)

Chain MA

uL29 (yeast L35)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)