IL_5JUU_232

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5JUU|1|A|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_232 not in the Motif Atlas

Homologous match to IL_8C3A_436

Geometric discrepancy: 0.1634

The information below is about IL_8C3A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5JUU|1|A|G|867
5JUU|1|A|G|868
5JUU|1|A|A|869
5JUU|1|A|C|870
*
5JUU|1|A|G|957
5JUU|1|A|U|958
5JUU|1|A|U|959
5JUU|1|A|U|960
5JUU|1|A|U|961

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain HA

eL30 (yeast L30)

Chain KB

uS15 (yeast S13)

Chain TB

uS8 (yeast S22)

Chain YB

eS27 (yeast S27)