IL_5JUU_237

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5JUU|1|A|A|1346, 5JUU|1|A|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_237 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.3325

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5JUU|1|A|A|1345
5JUU|1|A|A|1346
5JUU|1|A|U|1347
5JUU|1|A|A|1348
*
5JUU|1|A|U|1377
5JUU|1|A|U|1378
5JUU|1|A|C|1379
5JUU|1|A|U|1380

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain NB

uS9 (yeast S16)

Chain RB

uS10 (yeast S20)

Chain WA

RACK1 (yeast Asc1)