IL_5JUU_248

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUUGGUUACCCAUC*GUAAGGCUUUC

Length

27 nucleotides

Bulged bases

5JUU|1|EC|U|6771, 5JUU|1|EC|G|6772, 5JUU|1|EC|U|6775, 5JUU|1|EC|C|6778, 5JUU|1|EC|G|6819, 5JUU|1|EC|U|6823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|EC|G|6767
5JUU|1|EC|U|6768
5JUU|1|EC|A|6769
5JUU|1|EC|U|6770
5JUU|1|EC|U|6771
5JUU|1|EC|G|6772
5JUU|1|EC|G|6773
5JUU|1|EC|U|6774
5JUU|1|EC|U|6775
5JUU|1|EC|A|6776
5JUU|1|EC|C|6777
5JUU|1|EC|C|6778
5JUU|1|EC|C|6779
5JUU|1|EC|A|6780
5JUU|1|EC|U|6781
5JUU|1|EC|C|6782
*
5JUU|1|EC|G|6814
5JUU|1|EC|U|6815
5JUU|1|EC|A|6816
5JUU|1|EC|A|6817
5JUU|1|EC|G|6818
5JUU|1|EC|G|6819
5JUU|1|EC|C|6820
5JUU|1|EC|U|6821
5JUU|1|EC|U|6822
5JUU|1|EC|U|6823
5JUU|1|EC|C|6824

Current chains

Chain EC

IRES

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

uL1 (yeast L1)