IL_5JUU_249

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5JUU|1|A|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_249 not in the Motif Atlas

Homologous match to IL_8P9A_390

Geometric discrepancy: 0.42

The information below is about IL_8P9A_390

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5JUU|1|A|C|275
5JUU|1|A|C|276
*
5JUU|1|A|G|279
5JUU|1|A|U|280
5JUU|1|A|G|281

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)