IL_5JUU_252
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_252 not in the Motif Atlas
- Homologous match to IL_8CRE_016
- Geometric discrepancy: 0.1238
- The information below is about IL_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUU|1|B|G|404
5JUU|1|B|U|405
5JUU|1|B|G|406
5JUU|1|B|A|407
5JUU|1|B|A|408
5JUU|1|B|A|409
5JUU|1|B|U|410
*
5JUU|1|C|A|13
5JUU|1|C|C|14
5JUU|1|C|G|15
5JUU|1|C|G|16
5JUU|1|C|A|17
5JUU|1|C|U|18
5JUU|1|C|C|19
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain JA
- eL32 (yeast L32)
- Chain U
- uL22 (yeast L17)
Coloring options: