IL_5JVH_019
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 5JVH|1|X|G|789, 5JVH|1|X|A|801, 5JVH|1|X|A|802, 5JVH|1|X|C|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_019 not in the Motif Atlas
- Homologous match to IL_7A0S_021
- Geometric discrepancy: 0.0833
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5JVH|1|X|G|788
5JVH|1|X|G|789
5JVH|1|X|A|790
*
5JVH|1|X|U|800
5JVH|1|X|A|801
5JVH|1|X|A|802
5JVH|1|X|C|803
5JVH|1|X|C|804
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L22
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