IL_5JVH_033

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

5JVH|1|X|C|1152, 5JVH|1|X|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_033 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1757

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5JVH|1|X|C|1029
5JVH|1|X|U|1030
5JVH|1|X|C|1031
5JVH|1|X|A|1032
5JVH|1|X|G|1033
5JVH|1|X|U|1034
5JVH|1|X|G|1035
*
5JVH|1|X|C|1150
5JVH|1|X|U|1151
5JVH|1|X|C|1152
5JVH|1|X|A|1153
5JVH|1|X|A|1154
5JVH|1|X|G|1155

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13