IL_5JVH_037

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGGCUUAGAAGCAUGC*GCUCACUGG

Length

26 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JVH|1|X|C|1063
5JVH|1|X|U|1072
5JVH|1|X|G|1073
5JVH|1|X|G|1074
5JVH|1|X|C|1075
5JVH|1|X|U|1076
5JVH|1|X|U|1077
5JVH|1|X|A|1078
5JVH|1|X|G|1079
5JVH|1|X|A|1080
5JVH|1|X|A|1081
5JVH|1|X|G|1082
5JVH|1|X|C|1083
5JVH|1|X|A|1084
5JVH|1|X|U|1101
5JVH|1|X|G|1102
5JVH|1|X|C|1103
*
5JVH|1|X|G|1110
5JVH|1|X|C|1111
5JVH|1|X|U|1112
5JVH|1|X|C|1113
5JVH|1|X|A|1114
5JVH|1|X|C|1115
5JVH|1|X|U|1116
5JVH|1|X|G|1117
5JVH|1|X|G|1118

Current chains

Chain X

23S ribosomal RNA

Nearby chains